Honestly, I wouldn't over analyze it too much. I think 2 whole eggs and 1 white is not going to be an issue. However on the same note adding 40-50 calories of healthy yolk isn't going to hurt you one way or another either unless you are on a competiton diet and specifically need macros elsewhere...
From the diet you explained you could very easily just have yolk with each of your eggs since you are running low carb and higher protein / fat the egg yolks fit perfectly into that diet plan.