Absolutely look into a good pair of running shoes, if you can, try to get them customized. Also from experience with many years of soccer, the body adapts very quickly, i have had to switch shoes & cleats to adjust to the body's needs. Get a pair of knee wraps that breath for extra support during your running sessions, use some kind of a pain cream like bengay etc., i use aspercreme and blue emu, before and after. Stretching is key, there is an exercise that is extremely beneficial for the knees, have you ever seen the Muslim community pray in a seated position on their knees, take note of that, it is also a yoga movement, start off for a couple of minutes and work your way up...for supps. super cissus and zyflamend and fish oil, is what i use now. Gd luck!