I like to cook a half pound lean ground turkey meat, and blend it into tomato sauce (with Fennel,.. ummmm). Gives it the protein kick pizza needs to justify itself (for me anyways).
A whole wheat dough sounds great. I just go with a deep disk pre-made. I've been eating a LOT of pizza lately, since it's the new recipie on the block.
I also have a AMAZING General Tso's recipie- I mean AMAZING! .. but it takes some prep